HL_8CVK_191

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8CVK|1|2a|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVK_191 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1119

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8CVK|1|2a|C|342
8CVK|1|2a|U|343
8CVK|1|2a|A|344
8CVK|1|2a|C|345
8CVK|1|2a|G|346
8CVK|1|2a|G|347

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19

Chain 2t

30S ribosomal protein S20