HL_8CVK_220

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

G(5MU)(PSU)CAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVK_220 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1485

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8CVK|1|2x|G|53
8CVK|1|2x|5MU|54
8CVK|1|2x|PSU|55
8CVK|1|2x|C|56
8CVK|1|2x|A|57
8CVK|1|2x|A|58
8CVK|1|2x|A|59
8CVK|1|2x|U|60
8CVK|1|2x|C|61

Current chains

Chain 2x

P-site Peptidyl-tRNA fMRC-NH-tRNAmet RNA-part

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2G

50S ribosomal protein L5

Chain 2Q

50S ribosomal protein L16