3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
GACGGAAAU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CVK_239 not in the Motif Atlas
Homologous match to HL_9DFE_198
Geometric discrepancy: 0.112
The information below is about HL_9DFE_198
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50860.2
Basepair signature
cWW-F-cWH-F-F-F-F
Number of instances in this motif group
6

Unit IDs

8CVK|1|2A|G|2304
8CVK|1|2A|A|2305
8CVK|1|2A|C|2306
8CVK|1|2A|G|2307
8CVK|1|2A|G|2308
8CVK|1|2A|A|2309
8CVK|1|2A|A|2310
8CVK|1|2A|A|2311
8CVK|1|2A|U|2312

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2G
50S ribosomal protein L5

Coloring options:


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