HL_8CVL_058

3D structure

PDB id

8CVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

8CVL|1|1A|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVL_058 not in the Motif Atlas

Geometric match to HL_7RQB_059

Geometric discrepancy: 0.0558

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

8CVL|1|1A|C|2404
8CVL|1|1A|G|2405
8CVL|1|1A|U|2406
8CVL|1|1A|G|2407
8CVL|1|1A|U|2408
8CVL|1|1A|G|2409
8CVL|1|1A|G|2410
8CVL|1|1A|A|2411
8CVL|1|1A|A|2412
8CVL|1|1A|G|2413

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1P

50S ribosomal protein L15