HL_8CVL_158
3D structure
- PDB id
- 8CVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CG(PSU)AAC(5MU)A(PSU)AA(OMC)G
- Length
- 13 nucleotides
- Bulged bases
- 8CVL|1|2A|A|1913, 8CVL|1|2A|C|1914, 8CVL|1|2A|A|1916
- QA status
- Modified nucleotides: PSU, 5MU, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CVL_158 not in the Motif Atlas
- Homologous match to HL_8VTW_047
- Geometric discrepancy: 0.0976
- The information below is about HL_8VTW_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CVL|1|2A|C|1909
8CVL|1|2A|G|1910
8CVL|1|2A|PSU|1911
8CVL|1|2A|A|1912
8CVL|1|2A|A|1913
8CVL|1|2A|C|1914
8CVL|1|2A|5MU|1915
8CVL|1|2A|A|1916
8CVL|1|2A|PSU|1917
8CVL|1|2A|A|1918
8CVL|1|2A|A|1919
8CVL|1|2A|OMC|1920
8CVL|1|2A|G|1921
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2m
- 30S ribosomal protein S13
- Chain 2w
- Transfer RNA; tRNA
- Chain 2x
- Transfer RNA; tRNA
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