HL_8CVL_218
3D structure
- PDB id
- 8CVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- G(5MC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CVL_218 not in the Motif Atlas
- Geometric match to HL_4TUE_034
- Geometric discrepancy: 0.0774
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8CVL|1|2x|G|31
8CVL|1|2x|5MC|32
8CVL|1|2x|U|33
8CVL|1|2x|C|34
8CVL|1|2x|A|35
8CVL|1|2x|U|36
8CVL|1|2x|A|37
8CVL|1|2x|A|38
8CVL|1|2x|C|39
Current chains
- Chain 2x
- P-site Peptidyl-tRNA fMTHSMRC-NH-tRNAmet RNA-part
Nearby chains
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2i
- 30S ribosomal protein S9
- Chain 2m
- 30S ribosomal protein S13
- Chain 2v
- MF-mRNA
- Chain 2y
- Transfer RNA; tRNA
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