3D structure

PDB id
8CVL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.3 Å

Loop

Sequence
CUUUG
Length
5 nucleotides
Bulged bases
8CVL|1|1a|U|202, 8CVL|1|1a|U|204
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CVL_225 not in the Motif Atlas
Homologous match to HL_6CZR_234
Geometric discrepancy: 0.5622
The information below is about HL_6CZR_234
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_48778.1
Basepair signature
cWW-F
Number of instances in this motif group
51

Unit IDs

8CVL|1|1a|C|201
8CVL|1|1a|U|202
8CVL|1|1a|U|203
8CVL|1|1a|U|204
8CVL|1|1a|G|216

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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