HL_8CVL_231

3D structure

PDB id

8CVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

8CVL|1|2A|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CVL_231 not in the Motif Atlas

Homologous match to HL_9DFE_059

Geometric discrepancy: 0.1252

The information below is about HL_9DFE_059

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8CVL|1|2A|U|2528
8CVL|1|2A|G|2529
8CVL|1|2A|A|2530
8CVL|1|2A|A|2531
8CVL|1|2A|G|2532
8CVL|1|2A|A|2533
8CVL|1|2A|A|2534
8CVL|1|2A|G|2535

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6