HL_8D2K_001

3D structure

PDB id

8D2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Acidothermus cellulolyticus Cas9 ternary complex (Cleavage Intermediate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

8D2K|1|B|A|39, 8D2K|1|B|A|40

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8D2K_001 not in the Motif Atlas

Geometric match to HL_1H4S_002

Geometric discrepancy: 0.336

The information below is about HL_1H4S_002

Detailed Annotation

tRNA anticodon loop with synthetase

Broad Annotation

tRNA anticodon loop with synthetase

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

8D2K|1|B|U|36
8D2K|1|B|G|37
8D2K|1|B|A|38
8D2K|1|B|A|39
8D2K|1|B|A|40
8D2K|1|B|A|41

Current chains

Chain B

Single Guide RNA (102-MER)

Nearby chains