HL_8D2N_001

3D structure

PDB id

8D2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Acidothermus cellulolyticus Cas9 ternary complex (Pre-cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8D2N_001 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1595

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8D2N|1|B|U|36
8D2N|1|B|G|37
8D2N|1|B|A|38
8D2N|1|B|A|39
8D2N|1|B|A|40
8D2N|1|B|A|41

Current chains

Chain B

Single guide RNA (106-MER)

Nearby chains