HL_8D9K_002

3D structure

PDB id

8D9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of human METTL1-WDR4 in complex with Lys-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.72 Å

Loop

Sequence

GUUCAAGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8D9K_002 not in the Motif Atlas

Homologous match to HL_6UFG_008

Geometric discrepancy: 0.196

The information below is about HL_6UFG_008

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8D9K|1|C|G|53
8D9K|1|C|U|54
8D9K|1|C|U|55
8D9K|1|C|C|56
8D9K|1|C|A|57
8D9K|1|C|A|58
8D9K|1|C|G|59
8D9K|1|C|U|60
8D9K|1|C|C|61

Current chains

Chain C

RNA (65-MER)

Nearby chains

Chain B

tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4

Chain A

tRNA (guanine-N(7)-)-methyltransferase