3D structure

PDB id
8DK7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of theophylline aptamer soaked with TAL2
Experimental method
X-RAY DIFFRACTION
Resolution
2.46 Å

Loop

Sequence
GAAACAC
Length
7 nucleotides
Bulged bases
8DK7|1|F|A|14, 8DK7|1|F|A|16
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8DK7_002 not in the Motif Atlas
Geometric match to HL_8DK7_001
Geometric discrepancy: 0.0744
The information below is about HL_8DK7_001
Detailed Annotation
Fab BL3-6 binding hairpin with tSW
Broad Annotation
No text annotation
Motif group
HL_22584.6
Basepair signature
cWW-tSW-F
Number of instances in this motif group
26

Unit IDs

8DK7|1|F|G|13
8DK7|1|F|A|14
8DK7|1|F|A|15
8DK7|1|F|A|16
8DK7|1|F|C|17
8DK7|1|F|A|18
8DK7|1|F|C|19

Current chains

Chain F
RNA (34-MER)

Nearby chains

Chain D
FAB heavy chain
Chain E
FAB light chain

Coloring options:


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