HL_8E30_004

3D structure

PDB id

8E30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3142

Experimental method

ELECTRON MICROSCOPY

Resolution

1.91 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

8E30|1|I|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E30_004 not in the Motif Atlas

Geometric match to HL_4PMI_004

Geometric discrepancy: 0.2138

The information below is about HL_4PMI_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8E30|1|I|U|137
8E30|1|I|U|138
8E30|1|I|U|139
8E30|1|I|C|140
8E30|1|I|G|141
8E30|1|I|A|142

Current chains

Chain I

23S ribosomal RNA

Nearby chains