HL_8E30_051

3D structure

PDB id

8E30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3142

Experimental method

ELECTRON MICROSCOPY

Resolution

1.91 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUG

Length

84 nucleotides

Bulged bases

8E30|1|I|C|2104, 8E30|1|I|G|2116, 8E30|1|I|G|2128, 8E30|1|I|U|2131, 8E30|1|I|U|2132, 8E30|1|I|A|2135, 8E30|1|I|C|2160, 8E30|1|I|C|2164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E30|1|I|C|2103
8E30|1|I|C|2104
8E30|1|I|U|2105
8E30|1|I|U|2106
8E30|1|I|G|2107
8E30|1|I|A|2108
8E30|1|I|U|2109
8E30|1|I|G|2110
8E30|1|I|U|2111
8E30|1|I|G|2112
8E30|1|I|U|2113
8E30|1|I|A|2114
8E30|1|I|G|2115
8E30|1|I|G|2116
8E30|1|I|A|2117
8E30|1|I|U|2118
8E30|1|I|A|2119
8E30|1|I|G|2120
8E30|1|I|G|2121
8E30|1|I|U|2122
8E30|1|I|G|2123
8E30|1|I|G|2124
8E30|1|I|G|2125
8E30|1|I|A|2126
8E30|1|I|G|2127
8E30|1|I|G|2128
8E30|1|I|C|2129
8E30|1|I|U|2130
8E30|1|I|U|2131
8E30|1|I|U|2132
8E30|1|I|G|2133
8E30|1|I|A|2134
8E30|1|I|A|2135
8E30|1|I|G|2136
8E30|1|I|U|2137
8E30|1|I|G|2138
8E30|1|I|U|2139
8E30|1|I|G|2140
8E30|1|I|G|2141
8E30|1|I|A|2142
8E30|1|I|C|2143
8E30|1|I|G|2144
8E30|1|I|C|2145
8E30|1|I|C|2146
8E30|1|I|A|2147
8E30|1|I|G|2148
8E30|1|I|U|2149
8E30|1|I|C|2150
8E30|1|I|U|2151
8E30|1|I|G|2152
8E30|1|I|C|2153
8E30|1|I|A|2154
8E30|1|I|U|2155
8E30|1|I|G|2156
8E30|1|I|G|2157
8E30|1|I|A|2158
8E30|1|I|G|2159
8E30|1|I|C|2160
8E30|1|I|C|2161
8E30|1|I|G|2162
8E30|1|I|A|2163
8E30|1|I|C|2164
8E30|1|I|C|2165
8E30|1|I|U|2166
8E30|1|I|U|2167
8E30|1|I|G|2168
8E30|1|I|A|2169
8E30|1|I|A|2170
8E30|1|I|A|2171
8E30|1|I|U|2172
8E30|1|I|A|2173
8E30|1|I|C|2174
8E30|1|I|C|2175
8E30|1|I|A|2176
8E30|1|I|C|2177
8E30|1|I|C|2178
8E30|1|I|C|2179
8E30|1|I|U|2180
8E30|1|I|U|2181
8E30|1|I|U|2182
8E30|1|I|A|2183
8E30|1|I|A|2184
8E30|1|I|U|2185
8E30|1|I|G|2186

Current chains

Chain I

23S ribosomal RNA

Nearby chains