HL_8E32_004

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

8E32|1|I|U|138, 8E32|1|I|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E32_004 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2803

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8E32|1|I|G|136
8E32|1|I|U|137
8E32|1|I|U|138
8E32|1|I|U|139
8E32|1|I|C|140
8E32|1|I|G|141
8E32|1|I|A|142
8E32|1|I|C|143

Current chains

Chain I

23S ribosomal RNA

Nearby chains