HL_8E32_073

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

8E32|1|I|G|1452, 8E32|1|I|A|1453, 8E32|1|I|C|1454, 8E32|1|I|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E32_073 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.2734

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8E32|1|I|G|1450
8E32|1|I|C|1451
8E32|1|I|G|1452
8E32|1|I|A|1453
8E32|1|I|C|1454
8E32|1|I|G|1455
8E32|1|I|G|1456
8E32|1|I|U|1457
8E32|1|I|U|1458
8E32|1|I|G|1459
8E32|1|I|U|1460
8E32|1|I|C|1461

Current chains

Chain I

23S ribosomal RNA

Nearby chains