HL_8E32_075

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUG

Length

84 nucleotides

Bulged bases

8E32|1|I|G|2116, 8E32|1|I|A|2117, 8E32|1|I|U|2122, 8E32|1|I|G|2128, 8E32|1|I|U|2131, 8E32|1|I|U|2132, 8E32|1|I|A|2135, 8E32|1|I|G|2140, 8E32|1|I|C|2153, 8E32|1|I|G|2156, 8E32|1|I|A|2158, 8E32|1|I|C|2160, 8E32|1|I|U|2167, 8E32|1|I|A|2171, 8E32|1|I|U|2172, 8E32|1|I|C|2174

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E32|1|I|C|2103
8E32|1|I|C|2104
8E32|1|I|U|2105
8E32|1|I|U|2106
8E32|1|I|G|2107
8E32|1|I|A|2108
8E32|1|I|U|2109
8E32|1|I|G|2110
8E32|1|I|U|2111
8E32|1|I|G|2112
8E32|1|I|U|2113
8E32|1|I|A|2114
8E32|1|I|G|2115
8E32|1|I|G|2116
8E32|1|I|A|2117
8E32|1|I|U|2118
8E32|1|I|A|2119
8E32|1|I|G|2120
8E32|1|I|G|2121
8E32|1|I|U|2122
8E32|1|I|G|2123
8E32|1|I|G|2124
8E32|1|I|G|2125
8E32|1|I|A|2126
8E32|1|I|G|2127
8E32|1|I|G|2128
8E32|1|I|C|2129
8E32|1|I|U|2130
8E32|1|I|U|2131
8E32|1|I|U|2132
8E32|1|I|G|2133
8E32|1|I|A|2134
8E32|1|I|A|2135
8E32|1|I|G|2136
8E32|1|I|U|2137
8E32|1|I|G|2138
8E32|1|I|U|2139
8E32|1|I|G|2140
8E32|1|I|G|2141
8E32|1|I|A|2142
8E32|1|I|C|2143
8E32|1|I|G|2144
8E32|1|I|C|2145
8E32|1|I|C|2146
8E32|1|I|A|2147
8E32|1|I|G|2148
8E32|1|I|U|2149
8E32|1|I|C|2150
8E32|1|I|U|2151
8E32|1|I|G|2152
8E32|1|I|C|2153
8E32|1|I|A|2154
8E32|1|I|U|2155
8E32|1|I|G|2156
8E32|1|I|G|2157
8E32|1|I|A|2158
8E32|1|I|G|2159
8E32|1|I|C|2160
8E32|1|I|C|2161
8E32|1|I|G|2162
8E32|1|I|A|2163
8E32|1|I|C|2164
8E32|1|I|C|2165
8E32|1|I|U|2166
8E32|1|I|U|2167
8E32|1|I|G|2168
8E32|1|I|A|2169
8E32|1|I|A|2170
8E32|1|I|A|2171
8E32|1|I|U|2172
8E32|1|I|A|2173
8E32|1|I|C|2174
8E32|1|I|C|2175
8E32|1|I|A|2176
8E32|1|I|C|2177
8E32|1|I|C|2178
8E32|1|I|C|2179
8E32|1|I|U|2180
8E32|1|I|U|2181
8E32|1|I|U|2182
8E32|1|I|A|2183
8E32|1|I|A|2184
8E32|1|I|U|2185
8E32|1|I|G|2186

Current chains

Chain I

23S ribosomal RNA

Nearby chains