HL_8E32_076

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GUGCAAUGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E32_076 not in the Motif Atlas

Geometric match to HL_8H1B_001

Geometric discrepancy: 0.2469

The information below is about HL_8H1B_001

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8E32|1|I|G|2323
8E32|1|I|U|2324
8E32|1|I|G|2325
8E32|1|I|C|2326
8E32|1|I|A|2327
8E32|1|I|A|2328
8E32|1|I|U|2329
8E32|1|I|G|2330
8E32|1|I|G|2331
8E32|1|I|C|2332

Current chains

Chain I

23S ribosomal RNA

Nearby chains