HL_8E33_017
3D structure
- PDB id
- 8E33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to compound streptogramin analog SAB001
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.23 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 8E33|1|I|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8E33_017 not in the Motif Atlas
- Geometric match to HL_5J7L_150
- Geometric discrepancy: 0.0483
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8E33|1|I|U|566
8E33|1|I|U|567
8E33|1|I|U|568
8E33|1|I|U|569
8E33|1|I|G|570
8E33|1|I|U|571
8E33|1|I|A|572
8E33|1|I|U|573
8E33|1|I|A|574
8E33|1|I|A|575
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain N
- 50S ribosomal protein L3
- Chain Q
- 50S ribosomal protein L32
Coloring options: