HL_8E33_034

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8E33|1|I|U|1396, 8E33|1|I|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E33_034 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1087

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8E33|1|I|G|1389
8E33|1|I|U|1390
8E33|1|I|U|1391
8E33|1|I|A|1392
8E33|1|I|A|1393
8E33|1|I|U|1394
8E33|1|I|A|1395
8E33|1|I|U|1396
8E33|1|I|U|1397
8E33|1|I|C|1398

Current chains

Chain I

23S ribosomal RNA

Nearby chains