HL_8E33_037

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8E33|1|I|A|1535, 8E33|1|I|G|1537

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E33_037 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2465

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

8E33|1|I|C|1533
8E33|1|I|U|1534
8E33|1|I|A|1535
8E33|1|I|C|1536
8E33|1|I|G|1537
8E33|1|I|G|1538

Current chains

Chain I

23S ribosomal RNA

Nearby chains