HL_8E33_050

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

AGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUU

Length

88 nucleotides

Bulged bases

8E33|1|I|G|2116, 8E33|1|I|U|2122, 8E33|1|I|G|2125, 8E33|1|I|U|2131, 8E33|1|I|U|2132, 8E33|1|I|G|2133, 8E33|1|I|A|2135, 8E33|1|I|A|2154, 8E33|1|I|G|2157, 8E33|1|I|C|2160, 8E33|1|I|C|2164, 8E33|1|I|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E33|1|I|A|2101
8E33|1|I|G|2102
8E33|1|I|C|2103
8E33|1|I|C|2104
8E33|1|I|U|2105
8E33|1|I|U|2106
8E33|1|I|G|2107
8E33|1|I|A|2108
8E33|1|I|U|2109
8E33|1|I|G|2110
8E33|1|I|U|2111
8E33|1|I|G|2112
8E33|1|I|U|2113
8E33|1|I|A|2114
8E33|1|I|G|2115
8E33|1|I|G|2116
8E33|1|I|A|2117
8E33|1|I|U|2118
8E33|1|I|A|2119
8E33|1|I|G|2120
8E33|1|I|G|2121
8E33|1|I|U|2122
8E33|1|I|G|2123
8E33|1|I|G|2124
8E33|1|I|G|2125
8E33|1|I|A|2126
8E33|1|I|G|2127
8E33|1|I|G|2128
8E33|1|I|C|2129
8E33|1|I|U|2130
8E33|1|I|U|2131
8E33|1|I|U|2132
8E33|1|I|G|2133
8E33|1|I|A|2134
8E33|1|I|A|2135
8E33|1|I|G|2136
8E33|1|I|U|2137
8E33|1|I|G|2138
8E33|1|I|U|2139
8E33|1|I|G|2140
8E33|1|I|G|2141
8E33|1|I|A|2142
8E33|1|I|C|2143
8E33|1|I|G|2144
8E33|1|I|C|2145
8E33|1|I|C|2146
8E33|1|I|A|2147
8E33|1|I|G|2148
8E33|1|I|U|2149
8E33|1|I|C|2150
8E33|1|I|U|2151
8E33|1|I|G|2152
8E33|1|I|C|2153
8E33|1|I|A|2154
8E33|1|I|U|2155
8E33|1|I|G|2156
8E33|1|I|G|2157
8E33|1|I|A|2158
8E33|1|I|G|2159
8E33|1|I|C|2160
8E33|1|I|C|2161
8E33|1|I|G|2162
8E33|1|I|A|2163
8E33|1|I|C|2164
8E33|1|I|C|2165
8E33|1|I|U|2166
8E33|1|I|U|2167
8E33|1|I|G|2168
8E33|1|I|A|2169
8E33|1|I|A|2170
8E33|1|I|A|2171
8E33|1|I|U|2172
8E33|1|I|A|2173
8E33|1|I|C|2174
8E33|1|I|C|2175
8E33|1|I|A|2176
8E33|1|I|C|2177
8E33|1|I|C|2178
8E33|1|I|C|2179
8E33|1|I|U|2180
8E33|1|I|U|2181
8E33|1|I|U|2182
8E33|1|I|A|2183
8E33|1|I|A|2184
8E33|1|I|U|2185
8E33|1|I|G|2186
8E33|1|I|U|2187
8E33|1|I|U|2188

Current chains

Chain I

23S ribosomal RNA

Nearby chains