HL_8E33_066

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

8E33|1|I|U|2797, 8E33|1|I|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E33_066 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.2395

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8E33|1|I|C|2795
8E33|1|I|U|2796
8E33|1|I|U|2797
8E33|1|I|U|2798
8E33|1|I|A|2799
8E33|1|I|A|2800
8E33|1|I|G|2801

Current chains

Chain I

23S ribosomal RNA

Nearby chains