HL_8E33_072

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCAC

Length

50 nucleotides

Bulged bases

8E33|1|I|A|1069, 8E33|1|I|U|1078, 8E33|1|I|A|1095, 8E33|1|I|A|1096

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E33|1|I|G|1055
8E33|1|I|G|1056
8E33|1|I|A|1057
8E33|1|I|U|1058
8E33|1|I|G|1059
8E33|1|I|U|1060
8E33|1|I|U|1061
8E33|1|I|G|1062
8E33|1|I|G|1063
8E33|1|I|C|1064
8E33|1|I|U|1065
8E33|1|I|U|1066
8E33|1|I|A|1067
8E33|1|I|G|1068
8E33|1|I|A|1069
8E33|1|I|A|1070
8E33|1|I|G|1071
8E33|1|I|C|1072
8E33|1|I|A|1073
8E33|1|I|G|1074
8E33|1|I|C|1075
8E33|1|I|C|1076
8E33|1|I|A|1077
8E33|1|I|U|1078
8E33|1|I|C|1079
8E33|1|I|A|1080
8E33|1|I|U|1081
8E33|1|I|U|1082
8E33|1|I|U|1083
8E33|1|I|A|1084
8E33|1|I|A|1085
8E33|1|I|A|1086
8E33|1|I|G|1087
8E33|1|I|A|1088
8E33|1|I|A|1089
8E33|1|I|A|1090
8E33|1|I|G|1091
8E33|1|I|C|1092
8E33|1|I|G|1093
8E33|1|I|U|1094
8E33|1|I|A|1095
8E33|1|I|A|1096
8E33|1|I|U|1097
8E33|1|I|A|1098
8E33|1|I|G|1099
8E33|1|I|C|1100
8E33|1|I|U|1101
8E33|1|I|C|1102
8E33|1|I|A|1103
8E33|1|I|C|1104

Current chains

Chain I

23S ribosomal RNA

Nearby chains