HL_8E33_073

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

8E33|1|I|U|1729, 8E33|1|I|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E33_073 not in the Motif Atlas

Homologous match to HL_5J7L_214

Geometric discrepancy: 0.4672

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8E33|1|I|C|1727
8E33|1|I|C|1728
8E33|1|I|U|1729
8E33|1|I|C|1730
8E33|1|I|G|1731
8E33|1|I|C|1732
8E33|1|I|G|1733

Current chains

Chain I

23S ribosomal RNA

Nearby chains