HL_8E35_028

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8E35|1|I|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E35_028 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.3939

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8E35|1|I|C|1064
8E35|1|I|U|1065
8E35|1|I|U|1066
8E35|1|I|A|1067
8E35|1|I|G|1068
8E35|1|I|A|1069
8E35|1|I|A|1070
8E35|1|I|G|1071
8E35|1|I|C|1072
8E35|1|I|A|1073
8E35|1|I|G|1074

Current chains

Chain I

23S ribosomal RNA

Nearby chains