HL_8E36_051

3D structure

PDB id

8E36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3146

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUU

Length

88 nucleotides

Bulged bases

8E36|1|I|G|2116, 8E36|1|I|G|2125, 8E36|1|I|U|2131, 8E36|1|I|U|2132, 8E36|1|I|G|2133, 8E36|1|I|A|2135, 8E36|1|I|A|2154, 8E36|1|I|G|2157, 8E36|1|I|C|2160, 8E36|1|I|C|2164, 8E36|1|I|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E36|1|I|A|2101
8E36|1|I|G|2102
8E36|1|I|C|2103
8E36|1|I|C|2104
8E36|1|I|U|2105
8E36|1|I|U|2106
8E36|1|I|G|2107
8E36|1|I|A|2108
8E36|1|I|U|2109
8E36|1|I|G|2110
8E36|1|I|U|2111
8E36|1|I|G|2112
8E36|1|I|U|2113
8E36|1|I|A|2114
8E36|1|I|G|2115
8E36|1|I|G|2116
8E36|1|I|A|2117
8E36|1|I|U|2118
8E36|1|I|A|2119
8E36|1|I|G|2120
8E36|1|I|G|2121
8E36|1|I|U|2122
8E36|1|I|G|2123
8E36|1|I|G|2124
8E36|1|I|G|2125
8E36|1|I|A|2126
8E36|1|I|G|2127
8E36|1|I|G|2128
8E36|1|I|C|2129
8E36|1|I|U|2130
8E36|1|I|U|2131
8E36|1|I|U|2132
8E36|1|I|G|2133
8E36|1|I|A|2134
8E36|1|I|A|2135
8E36|1|I|G|2136
8E36|1|I|U|2137
8E36|1|I|G|2138
8E36|1|I|U|2139
8E36|1|I|G|2140
8E36|1|I|G|2141
8E36|1|I|A|2142
8E36|1|I|C|2143
8E36|1|I|G|2144
8E36|1|I|C|2145
8E36|1|I|C|2146
8E36|1|I|A|2147
8E36|1|I|G|2148
8E36|1|I|U|2149
8E36|1|I|C|2150
8E36|1|I|U|2151
8E36|1|I|G|2152
8E36|1|I|C|2153
8E36|1|I|A|2154
8E36|1|I|U|2155
8E36|1|I|G|2156
8E36|1|I|G|2157
8E36|1|I|A|2158
8E36|1|I|G|2159
8E36|1|I|C|2160
8E36|1|I|C|2161
8E36|1|I|G|2162
8E36|1|I|A|2163
8E36|1|I|C|2164
8E36|1|I|C|2165
8E36|1|I|U|2166
8E36|1|I|U|2167
8E36|1|I|G|2168
8E36|1|I|A|2169
8E36|1|I|A|2170
8E36|1|I|A|2171
8E36|1|I|U|2172
8E36|1|I|A|2173
8E36|1|I|C|2174
8E36|1|I|C|2175
8E36|1|I|A|2176
8E36|1|I|C|2177
8E36|1|I|C|2178
8E36|1|I|C|2179
8E36|1|I|U|2180
8E36|1|I|U|2181
8E36|1|I|U|2182
8E36|1|I|A|2183
8E36|1|I|A|2184
8E36|1|I|U|2185
8E36|1|I|G|2186
8E36|1|I|U|2187
8E36|1|I|U|2188

Current chains

Chain I

23S ribosomal RNA

Nearby chains