HL_8E36_064

3D structure

PDB id

8E36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3146

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E36_064 not in the Motif Atlas

Geometric match to HL_5B2T_003

Geometric discrepancy: 0.0864

The information below is about HL_5B2T_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8E36|1|I|C|2658
8E36|1|I|G|2659
8E36|1|I|A|2660
8E36|1|I|G|2661
8E36|1|I|A|2662
8E36|1|I|G|2663

Current chains

Chain I

23S ribosomal RNA

Nearby chains