HL_8E3L_008

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E3L_008 not in the Motif Atlas

Homologous match to HL_7RQB_008

Geometric discrepancy: 0.1028

The information below is about HL_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.7

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

9

Unit IDs

8E3L|1|I|C|246
8E3L|1|I|G|247
8E3L|1|I|G|248
8E3L|1|I|C|249
8E3L|1|I|G|250
8E3L|1|I|A|251
8E3L|1|I|G|252

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15