HL_8E3L_073

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUG

Length

84 nucleotides

Bulged bases

8E3L|1|I|G|2115, 8E3L|1|I|G|2116, 8E3L|1|I|U|2122, 8E3L|1|I|G|2128, 8E3L|1|I|U|2131, 8E3L|1|I|U|2132, 8E3L|1|I|A|2135, 8E3L|1|I|G|2140, 8E3L|1|I|A|2154, 8E3L|1|I|U|2155, 8E3L|1|I|G|2157, 8E3L|1|I|A|2163, 8E3L|1|I|C|2164, 8E3L|1|I|U|2167, 8E3L|1|I|G|2168, 8E3L|1|I|A|2171, 8E3L|1|I|U|2172, 8E3L|1|I|C|2174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E3L|1|I|C|2103
8E3L|1|I|C|2104
8E3L|1|I|U|2105
8E3L|1|I|U|2106
8E3L|1|I|G|2107
8E3L|1|I|A|2108
8E3L|1|I|U|2109
8E3L|1|I|G|2110
8E3L|1|I|U|2111
8E3L|1|I|G|2112
8E3L|1|I|U|2113
8E3L|1|I|A|2114
8E3L|1|I|G|2115
8E3L|1|I|G|2116
8E3L|1|I|A|2117
8E3L|1|I|U|2118
8E3L|1|I|A|2119
8E3L|1|I|G|2120
8E3L|1|I|G|2121
8E3L|1|I|U|2122
8E3L|1|I|G|2123
8E3L|1|I|G|2124
8E3L|1|I|G|2125
8E3L|1|I|A|2126
8E3L|1|I|G|2127
8E3L|1|I|G|2128
8E3L|1|I|C|2129
8E3L|1|I|U|2130
8E3L|1|I|U|2131
8E3L|1|I|U|2132
8E3L|1|I|G|2133
8E3L|1|I|A|2134
8E3L|1|I|A|2135
8E3L|1|I|G|2136
8E3L|1|I|U|2137
8E3L|1|I|G|2138
8E3L|1|I|U|2139
8E3L|1|I|G|2140
8E3L|1|I|G|2141
8E3L|1|I|A|2142
8E3L|1|I|C|2143
8E3L|1|I|G|2144
8E3L|1|I|C|2145
8E3L|1|I|C|2146
8E3L|1|I|A|2147
8E3L|1|I|G|2148
8E3L|1|I|U|2149
8E3L|1|I|C|2150
8E3L|1|I|U|2151
8E3L|1|I|G|2152
8E3L|1|I|C|2153
8E3L|1|I|A|2154
8E3L|1|I|U|2155
8E3L|1|I|G|2156
8E3L|1|I|G|2157
8E3L|1|I|A|2158
8E3L|1|I|G|2159
8E3L|1|I|C|2160
8E3L|1|I|C|2161
8E3L|1|I|G|2162
8E3L|1|I|A|2163
8E3L|1|I|C|2164
8E3L|1|I|C|2165
8E3L|1|I|U|2166
8E3L|1|I|U|2167
8E3L|1|I|G|2168
8E3L|1|I|A|2169
8E3L|1|I|A|2170
8E3L|1|I|A|2171
8E3L|1|I|U|2172
8E3L|1|I|A|2173
8E3L|1|I|C|2174
8E3L|1|I|C|2175
8E3L|1|I|A|2176
8E3L|1|I|C|2177
8E3L|1|I|C|2178
8E3L|1|I|C|2179
8E3L|1|I|U|2180
8E3L|1|I|U|2181
8E3L|1|I|U|2182
8E3L|1|I|A|2183
8E3L|1|I|A|2184
8E3L|1|I|U|2185
8E3L|1|I|G|2186

Current chains

Chain I

50S ribosomal RNA

Nearby chains