HL_8E3M_050

3D structure

PDB id

8E3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to L-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

AGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUU

Length

88 nucleotides

Bulged bases

8E3M|1|I|C|2104, 8E3M|1|I|G|2116, 8E3M|1|I|U|2122, 8E3M|1|I|G|2125, 8E3M|1|I|G|2128, 8E3M|1|I|U|2131, 8E3M|1|I|U|2132, 8E3M|1|I|G|2133, 8E3M|1|I|A|2135, 8E3M|1|I|A|2154, 8E3M|1|I|G|2157, 8E3M|1|I|G|2159, 8E3M|1|I|C|2160, 8E3M|1|I|C|2164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E3M|1|I|A|2101
8E3M|1|I|G|2102
8E3M|1|I|C|2103
8E3M|1|I|C|2104
8E3M|1|I|U|2105
8E3M|1|I|U|2106
8E3M|1|I|G|2107
8E3M|1|I|A|2108
8E3M|1|I|U|2109
8E3M|1|I|G|2110
8E3M|1|I|U|2111
8E3M|1|I|G|2112
8E3M|1|I|U|2113
8E3M|1|I|A|2114
8E3M|1|I|G|2115
8E3M|1|I|G|2116
8E3M|1|I|A|2117
8E3M|1|I|U|2118
8E3M|1|I|A|2119
8E3M|1|I|G|2120
8E3M|1|I|G|2121
8E3M|1|I|U|2122
8E3M|1|I|G|2123
8E3M|1|I|G|2124
8E3M|1|I|G|2125
8E3M|1|I|A|2126
8E3M|1|I|G|2127
8E3M|1|I|G|2128
8E3M|1|I|C|2129
8E3M|1|I|U|2130
8E3M|1|I|U|2131
8E3M|1|I|U|2132
8E3M|1|I|G|2133
8E3M|1|I|A|2134
8E3M|1|I|A|2135
8E3M|1|I|G|2136
8E3M|1|I|U|2137
8E3M|1|I|G|2138
8E3M|1|I|U|2139
8E3M|1|I|G|2140
8E3M|1|I|G|2141
8E3M|1|I|A|2142
8E3M|1|I|C|2143
8E3M|1|I|G|2144
8E3M|1|I|C|2145
8E3M|1|I|C|2146
8E3M|1|I|A|2147
8E3M|1|I|G|2148
8E3M|1|I|U|2149
8E3M|1|I|C|2150
8E3M|1|I|U|2151
8E3M|1|I|G|2152
8E3M|1|I|C|2153
8E3M|1|I|A|2154
8E3M|1|I|U|2155
8E3M|1|I|G|2156
8E3M|1|I|G|2157
8E3M|1|I|A|2158
8E3M|1|I|G|2159
8E3M|1|I|C|2160
8E3M|1|I|C|2161
8E3M|1|I|G|2162
8E3M|1|I|A|2163
8E3M|1|I|C|2164
8E3M|1|I|C|2165
8E3M|1|I|U|2166
8E3M|1|I|U|2167
8E3M|1|I|G|2168
8E3M|1|I|A|2169
8E3M|1|I|A|2170
8E3M|1|I|A|2171
8E3M|1|I|U|2172
8E3M|1|I|A|2173
8E3M|1|I|C|2174
8E3M|1|I|C|2175
8E3M|1|I|A|2176
8E3M|1|I|C|2177
8E3M|1|I|C|2178
8E3M|1|I|C|2179
8E3M|1|I|U|2180
8E3M|1|I|U|2181
8E3M|1|I|U|2182
8E3M|1|I|A|2183
8E3M|1|I|A|2184
8E3M|1|I|U|2185
8E3M|1|I|G|2186
8E3M|1|I|U|2187
8E3M|1|I|U|2188

Current chains

Chain I

50S ribosomal RNA

Nearby chains