HL_8E3O_021

3D structure

PDB id

8E3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to solithromycin and VM1

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E3O_021 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.2525

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

8E3O|1|I|G|712
8E3O|1|I|G|713
8E3O|1|I|U|714
8E3O|1|I|A|715
8E3O|1|I|A|716
8E3O|1|I|C|717
8E3O|1|I|A|718
8E3O|1|I|C|719

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2