HL_8E3O_038

3D structure

PDB id

8E3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to solithromycin and VM1

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8E3O|1|I|A|1535, 8E3O|1|I|G|1537

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E3O_038 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.2656

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8E3O|1|I|C|1533
8E3O|1|I|U|1534
8E3O|1|I|A|1535
8E3O|1|I|C|1536
8E3O|1|I|G|1537
8E3O|1|I|G|1538

Current chains

Chain I

23S ribosomal RNA

Nearby chains