HL_8E41_074

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

AGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUU

Length

88 nucleotides

Bulged bases

8E41|1|I|C|2104, 8E41|1|I|G|2116, 8E41|1|I|U|2122, 8E41|1|I|G|2125, 8E41|1|I|A|2126, 8E41|1|I|G|2128, 8E41|1|I|U|2131, 8E41|1|I|U|2132, 8E41|1|I|G|2133, 8E41|1|I|A|2135, 8E41|1|I|U|2139, 8E41|1|I|G|2140, 8E41|1|I|C|2153, 8E41|1|I|G|2156, 8E41|1|I|G|2157, 8E41|1|I|C|2160, 8E41|1|I|A|2163, 8E41|1|I|C|2164, 8E41|1|I|U|2167, 8E41|1|I|A|2171, 8E41|1|I|U|2172, 8E41|1|I|A|2173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E41|1|I|A|2101
8E41|1|I|G|2102
8E41|1|I|C|2103
8E41|1|I|C|2104
8E41|1|I|U|2105
8E41|1|I|U|2106
8E41|1|I|G|2107
8E41|1|I|A|2108
8E41|1|I|U|2109
8E41|1|I|G|2110
8E41|1|I|U|2111
8E41|1|I|G|2112
8E41|1|I|U|2113
8E41|1|I|A|2114
8E41|1|I|G|2115
8E41|1|I|G|2116
8E41|1|I|A|2117
8E41|1|I|U|2118
8E41|1|I|A|2119
8E41|1|I|G|2120
8E41|1|I|G|2121
8E41|1|I|U|2122
8E41|1|I|G|2123
8E41|1|I|G|2124
8E41|1|I|G|2125
8E41|1|I|A|2126
8E41|1|I|G|2127
8E41|1|I|G|2128
8E41|1|I|C|2129
8E41|1|I|U|2130
8E41|1|I|U|2131
8E41|1|I|U|2132
8E41|1|I|G|2133
8E41|1|I|A|2134
8E41|1|I|A|2135
8E41|1|I|G|2136
8E41|1|I|U|2137
8E41|1|I|G|2138
8E41|1|I|U|2139
8E41|1|I|G|2140
8E41|1|I|G|2141
8E41|1|I|A|2142
8E41|1|I|C|2143
8E41|1|I|G|2144
8E41|1|I|C|2145
8E41|1|I|C|2146
8E41|1|I|A|2147
8E41|1|I|G|2148
8E41|1|I|U|2149
8E41|1|I|C|2150
8E41|1|I|U|2151
8E41|1|I|G|2152
8E41|1|I|C|2153
8E41|1|I|A|2154
8E41|1|I|U|2155
8E41|1|I|G|2156
8E41|1|I|G|2157
8E41|1|I|A|2158
8E41|1|I|G|2159
8E41|1|I|C|2160
8E41|1|I|C|2161
8E41|1|I|G|2162
8E41|1|I|A|2163
8E41|1|I|C|2164
8E41|1|I|C|2165
8E41|1|I|U|2166
8E41|1|I|U|2167
8E41|1|I|G|2168
8E41|1|I|A|2169
8E41|1|I|A|2170
8E41|1|I|A|2171
8E41|1|I|U|2172
8E41|1|I|A|2173
8E41|1|I|C|2174
8E41|1|I|C|2175
8E41|1|I|A|2176
8E41|1|I|C|2177
8E41|1|I|C|2178
8E41|1|I|C|2179
8E41|1|I|U|2180
8E41|1|I|U|2181
8E41|1|I|U|2182
8E41|1|I|A|2183
8E41|1|I|A|2184
8E41|1|I|U|2185
8E41|1|I|G|2186
8E41|1|I|U|2187
8E41|1|I|U|2188

Current chains

Chain I

50S ribosomal RNA

Nearby chains