HL_8E43_004

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

8E43|1|I|U|138, 8E43|1|I|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E43_004 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3129

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8E43|1|I|G|136
8E43|1|I|U|137
8E43|1|I|U|138
8E43|1|I|U|139
8E43|1|I|C|140
8E43|1|I|G|141
8E43|1|I|A|142
8E43|1|I|C|143

Current chains

Chain I

23S ribosomal RNA

Nearby chains