HL_8E43_018

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

8E43|1|I|A|613, 8E43|1|I|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E43_018 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.1175

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

8E43|1|I|C|611
8E43|1|I|G|612
8E43|1|I|A|613
8E43|1|I|A|614
8E43|1|I|U|615
8E43|1|I|A|616
8E43|1|I|G|617

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4