HL_8E43_048

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CG(PSU)AAC(3TD)A(PSU)AACG

Length

13 nucleotides

Bulged bases

8E43|1|I|A|1913, 8E43|1|I|C|1914, 8E43|1|I|A|1916

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E43_048 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3994

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8E43|1|I|C|1909
8E43|1|I|G|1910
8E43|1|I|PSU|1911
8E43|1|I|A|1912
8E43|1|I|A|1913
8E43|1|I|C|1914
8E43|1|I|3TD|1915
8E43|1|I|A|1916
8E43|1|I|PSU|1917
8E43|1|I|A|1918
8E43|1|I|A|1919
8E43|1|I|C|1920
8E43|1|I|G|1921

Current chains

Chain I

23S ribosomal RNA

Nearby chains