HL_8E43_060

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E43_060 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1379

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8E43|1|I|A|2471
8E43|1|I|G|2472
8E43|1|I|U|2473
8E43|1|I|U|2474
8E43|1|I|C|2475
8E43|1|I|A|2476
8E43|1|I|U|2477
8E43|1|I|A|2478
8E43|1|I|U|2479

Current chains

Chain I

23S ribosomal RNA

Nearby chains