HL_8E44_034

3D structure

PDB id

8E44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC09

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8E44|1|I|U|1396, 8E44|1|I|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E44_034 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1247

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8E44|1|I|G|1389
8E44|1|I|U|1390
8E44|1|I|U|1391
8E44|1|I|A|1392
8E44|1|I|A|1393
8E44|1|I|U|1394
8E44|1|I|A|1395
8E44|1|I|U|1396
8E44|1|I|U|1397
8E44|1|I|C|1398

Current chains

Chain I

23S ribosomal RNA

Nearby chains