HL_8E44_072

3D structure

PDB id

8E44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC09

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

AGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACU

Length

52 nucleotides

Bulged bases

8E44|1|I|U|1061, 8E44|1|I|A|1069, 8E44|1|I|U|1078

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E44|1|I|A|1054
8E44|1|I|G|1055
8E44|1|I|G|1056
8E44|1|I|A|1057
8E44|1|I|U|1058
8E44|1|I|G|1059
8E44|1|I|U|1060
8E44|1|I|U|1061
8E44|1|I|G|1062
8E44|1|I|G|1063
8E44|1|I|C|1064
8E44|1|I|U|1065
8E44|1|I|U|1066
8E44|1|I|A|1067
8E44|1|I|G|1068
8E44|1|I|A|1069
8E44|1|I|A|1070
8E44|1|I|G|1071
8E44|1|I|C|1072
8E44|1|I|A|1073
8E44|1|I|G|1074
8E44|1|I|C|1075
8E44|1|I|C|1076
8E44|1|I|A|1077
8E44|1|I|U|1078
8E44|1|I|C|1079
8E44|1|I|A|1080
8E44|1|I|U|1081
8E44|1|I|U|1082
8E44|1|I|U|1083
8E44|1|I|A|1084
8E44|1|I|A|1085
8E44|1|I|A|1086
8E44|1|I|G|1087
8E44|1|I|A|1088
8E44|1|I|A|1089
8E44|1|I|A|1090
8E44|1|I|G|1091
8E44|1|I|C|1092
8E44|1|I|G|1093
8E44|1|I|U|1094
8E44|1|I|A|1095
8E44|1|I|A|1096
8E44|1|I|U|1097
8E44|1|I|A|1098
8E44|1|I|G|1099
8E44|1|I|C|1100
8E44|1|I|U|1101
8E44|1|I|C|1102
8E44|1|I|A|1103
8E44|1|I|C|1104
8E44|1|I|U|1105

Current chains

Chain I

23S ribosomal RNA

Nearby chains