HL_8E45_038

3D structure

PDB id

8E45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC17

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

ACUACGGU

Length

8 nucleotides

Bulged bases

8E45|1|I|A|1535

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E45_038 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.289

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8E45|1|I|A|1532
8E45|1|I|C|1533
8E45|1|I|U|1534
8E45|1|I|A|1535
8E45|1|I|C|1536
8E45|1|I|G|1537
8E45|1|I|G|1538
8E45|1|I|U|1539

Current chains

Chain I

23S ribosomal RNA

Nearby chains