HL_8E46_058

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E46_058 not in the Motif Atlas

Homologous match to HL_4WF9_054

Geometric discrepancy: 0.297

The information below is about HL_4WF9_054

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8E46|1|I|C|2374
8E46|1|I|G|2375
8E46|1|I|A|2376
8E46|1|I|A|2377
8E46|1|I|A|2378
8E46|1|I|G|2379

Current chains

Chain I

23S ribosomal RNA

Nearby chains