HL_8E47_013

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8E47|1|I|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E47_013 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.096

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8E47|1|I|G|410
8E47|1|I|G|411
8E47|1|I|A|412
8E47|1|I|C|413
8E47|1|I|C|414
8E47|1|I|A|415
8E47|1|I|U|416
8E47|1|I|C|417

Current chains

Chain I

23S ribosomal RNA

Nearby chains