HL_8E47_037
3D structure
- PDB id
- 8E47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to antibiotic analog SLC26
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.32 Å
Loop
- Sequence
- GCAAAUC
- Length
- 7 nucleotides
- Bulged bases
- 8E47|1|I|C|1493, 8E47|1|I|U|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8E47_037 not in the Motif Atlas
- Homologous match to HL_5J7L_170
- Geometric discrepancy: 0.1435
- The information below is about HL_5J7L_170
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_57176.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8E47|1|I|G|1492
8E47|1|I|C|1493
8E47|1|I|A|1494
8E47|1|I|A|1495
8E47|1|I|A|1496
8E47|1|I|U|1497
8E47|1|I|C|1498
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L2
Coloring options: