HL_8E47_048

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CG(PSU)AAC(3TD)A(PSU)AACG

Length

13 nucleotides

Bulged bases

8E47|1|I|A|1912, 8E47|1|I|A|1913, 8E47|1|I|C|1914, 8E47|1|I|A|1916

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E47_048 not in the Motif Atlas

Homologous match to HL_7RQB_048

Geometric discrepancy: 0.5958

The information below is about HL_7RQB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E47|1|I|C|1909
8E47|1|I|G|1910
8E47|1|I|PSU|1911
8E47|1|I|A|1912
8E47|1|I|A|1913
8E47|1|I|C|1914
8E47|1|I|3TD|1915
8E47|1|I|A|1916
8E47|1|I|PSU|1917
8E47|1|I|A|1918
8E47|1|I|A|1919
8E47|1|I|C|1920
8E47|1|I|G|1921

Current chains

Chain I

23S ribosomal RNA

Nearby chains