HL_8E47_076

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

AGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUU

Length

88 nucleotides

Bulged bases

8E47|1|I|C|2104, 8E47|1|I|G|2110, 8E47|1|I|G|2116, 8E47|1|I|U|2122, 8E47|1|I|G|2125, 8E47|1|I|A|2126, 8E47|1|I|G|2128, 8E47|1|I|U|2131, 8E47|1|I|U|2132, 8E47|1|I|G|2133, 8E47|1|I|A|2134, 8E47|1|I|A|2135, 8E47|1|I|U|2139, 8E47|1|I|G|2140, 8E47|1|I|G|2157, 8E47|1|I|A|2158, 8E47|1|I|C|2160, 8E47|1|I|A|2163, 8E47|1|I|C|2164, 8E47|1|I|U|2167, 8E47|1|I|A|2171, 8E47|1|I|U|2172, 8E47|1|I|A|2173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E47|1|I|A|2101
8E47|1|I|G|2102
8E47|1|I|C|2103
8E47|1|I|C|2104
8E47|1|I|U|2105
8E47|1|I|U|2106
8E47|1|I|G|2107
8E47|1|I|A|2108
8E47|1|I|U|2109
8E47|1|I|G|2110
8E47|1|I|U|2111
8E47|1|I|G|2112
8E47|1|I|U|2113
8E47|1|I|A|2114
8E47|1|I|G|2115
8E47|1|I|G|2116
8E47|1|I|A|2117
8E47|1|I|U|2118
8E47|1|I|A|2119
8E47|1|I|G|2120
8E47|1|I|G|2121
8E47|1|I|U|2122
8E47|1|I|G|2123
8E47|1|I|G|2124
8E47|1|I|G|2125
8E47|1|I|A|2126
8E47|1|I|G|2127
8E47|1|I|G|2128
8E47|1|I|C|2129
8E47|1|I|U|2130
8E47|1|I|U|2131
8E47|1|I|U|2132
8E47|1|I|G|2133
8E47|1|I|A|2134
8E47|1|I|A|2135
8E47|1|I|G|2136
8E47|1|I|U|2137
8E47|1|I|G|2138
8E47|1|I|U|2139
8E47|1|I|G|2140
8E47|1|I|G|2141
8E47|1|I|A|2142
8E47|1|I|C|2143
8E47|1|I|G|2144
8E47|1|I|C|2145
8E47|1|I|C|2146
8E47|1|I|A|2147
8E47|1|I|G|2148
8E47|1|I|U|2149
8E47|1|I|C|2150
8E47|1|I|U|2151
8E47|1|I|G|2152
8E47|1|I|C|2153
8E47|1|I|A|2154
8E47|1|I|U|2155
8E47|1|I|G|2156
8E47|1|I|G|2157
8E47|1|I|A|2158
8E47|1|I|G|2159
8E47|1|I|C|2160
8E47|1|I|C|2161
8E47|1|I|G|2162
8E47|1|I|A|2163
8E47|1|I|C|2164
8E47|1|I|C|2165
8E47|1|I|U|2166
8E47|1|I|U|2167
8E47|1|I|G|2168
8E47|1|I|A|2169
8E47|1|I|A|2170
8E47|1|I|A|2171
8E47|1|I|U|2172
8E47|1|I|A|2173
8E47|1|I|C|2174
8E47|1|I|C|2175
8E47|1|I|A|2176
8E47|1|I|C|2177
8E47|1|I|C|2178
8E47|1|I|C|2179
8E47|1|I|U|2180
8E47|1|I|U|2181
8E47|1|I|U|2182
8E47|1|I|A|2183
8E47|1|I|A|2184
8E47|1|I|U|2185
8E47|1|I|G|2186
8E47|1|I|U|2187
8E47|1|I|U|2188

Current chains

Chain I

23S ribosomal RNA

Nearby chains