HL_8E48_013

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8E48|1|I|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E48_013 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0907

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8E48|1|I|G|410
8E48|1|I|G|411
8E48|1|I|A|412
8E48|1|I|C|413
8E48|1|I|C|414
8E48|1|I|A|415
8E48|1|I|U|416
8E48|1|I|C|417

Current chains

Chain I

23S ribosomal RNA

Nearby chains