HL_8E48_051

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUU

Length

76 nucleotides

Bulged bases

8E48|1|I|G|2116, 8E48|1|I|U|2122, 8E48|1|I|G|2128, 8E48|1|I|U|2130, 8E48|1|I|U|2132, 8E48|1|I|A|2135, 8E48|1|I|C|2160, 8E48|1|I|A|2163, 8E48|1|I|C|2164

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E48|1|I|G|2107
8E48|1|I|A|2108
8E48|1|I|U|2109
8E48|1|I|G|2110
8E48|1|I|U|2111
8E48|1|I|G|2112
8E48|1|I|U|2113
8E48|1|I|A|2114
8E48|1|I|G|2115
8E48|1|I|G|2116
8E48|1|I|A|2117
8E48|1|I|U|2118
8E48|1|I|A|2119
8E48|1|I|G|2120
8E48|1|I|G|2121
8E48|1|I|U|2122
8E48|1|I|G|2123
8E48|1|I|G|2124
8E48|1|I|G|2125
8E48|1|I|A|2126
8E48|1|I|G|2127
8E48|1|I|G|2128
8E48|1|I|C|2129
8E48|1|I|U|2130
8E48|1|I|U|2131
8E48|1|I|U|2132
8E48|1|I|G|2133
8E48|1|I|A|2134
8E48|1|I|A|2135
8E48|1|I|G|2136
8E48|1|I|U|2137
8E48|1|I|G|2138
8E48|1|I|U|2139
8E48|1|I|G|2140
8E48|1|I|G|2141
8E48|1|I|A|2142
8E48|1|I|C|2143
8E48|1|I|G|2144
8E48|1|I|C|2145
8E48|1|I|C|2146
8E48|1|I|A|2147
8E48|1|I|G|2148
8E48|1|I|U|2149
8E48|1|I|C|2150
8E48|1|I|U|2151
8E48|1|I|G|2152
8E48|1|I|C|2153
8E48|1|I|A|2154
8E48|1|I|U|2155
8E48|1|I|G|2156
8E48|1|I|G|2157
8E48|1|I|A|2158
8E48|1|I|G|2159
8E48|1|I|C|2160
8E48|1|I|C|2161
8E48|1|I|G|2162
8E48|1|I|A|2163
8E48|1|I|C|2164
8E48|1|I|C|2165
8E48|1|I|U|2166
8E48|1|I|U|2167
8E48|1|I|G|2168
8E48|1|I|A|2169
8E48|1|I|A|2170
8E48|1|I|A|2171
8E48|1|I|U|2172
8E48|1|I|A|2173
8E48|1|I|C|2174
8E48|1|I|C|2175
8E48|1|I|A|2176
8E48|1|I|C|2177
8E48|1|I|C|2178
8E48|1|I|C|2179
8E48|1|I|U|2180
8E48|1|I|U|2181
8E48|1|I|U|2182

Current chains

Chain I

23S ribosomal RNA

Nearby chains