HL_8E48_066

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8E48|1|I|G|2751, 8E48|1|I|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8E48_066 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1194

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

8E48|1|I|C|2745
8E48|1|I|U|2746
8E48|1|I|G|2747
8E48|1|I|A|2748
8E48|1|I|A|2749
8E48|1|I|A|2750
8E48|1|I|G|2751
8E48|1|I|C|2752
8E48|1|I|A|2753
8E48|1|I|U|2754
8E48|1|I|C|2755
8E48|1|I|U|2756
8E48|1|I|A|2757
8E48|1|I|A|2758
8E48|1|I|G|2759

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13