HL_8E48_075

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCAC

Length

50 nucleotides

Bulged bases

8E48|1|I|U|1061, 8E48|1|I|A|1069, 8E48|1|I|U|1078

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E48|1|I|G|1055
8E48|1|I|G|1056
8E48|1|I|A|1057
8E48|1|I|U|1058
8E48|1|I|G|1059
8E48|1|I|U|1060
8E48|1|I|U|1061
8E48|1|I|G|1062
8E48|1|I|G|1063
8E48|1|I|C|1064
8E48|1|I|U|1065
8E48|1|I|U|1066
8E48|1|I|A|1067
8E48|1|I|G|1068
8E48|1|I|A|1069
8E48|1|I|A|1070
8E48|1|I|G|1071
8E48|1|I|C|1072
8E48|1|I|A|1073
8E48|1|I|G|1074
8E48|1|I|C|1075
8E48|1|I|C|1076
8E48|1|I|A|1077
8E48|1|I|U|1078
8E48|1|I|C|1079
8E48|1|I|A|1080
8E48|1|I|U|1081
8E48|1|I|U|1082
8E48|1|I|U|1083
8E48|1|I|A|1084
8E48|1|I|A|1085
8E48|1|I|A|1086
8E48|1|I|G|1087
8E48|1|I|A|1088
8E48|1|I|A|1089
8E48|1|I|A|1090
8E48|1|I|G|1091
8E48|1|I|C|1092
8E48|1|I|G|1093
8E48|1|I|U|1094
8E48|1|I|A|1095
8E48|1|I|A|1096
8E48|1|I|U|1097
8E48|1|I|A|1098
8E48|1|I|G|1099
8E48|1|I|C|1100
8E48|1|I|U|1101
8E48|1|I|C|1102
8E48|1|I|A|1103
8E48|1|I|C|1104

Current chains

Chain I

23S ribosomal RNA

Nearby chains